Protein–RNA interactions for Protein: P29965

CD40LG, CD40 ligand, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40LGP29965 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC12.98□□□□□ -0.33
CD40LGP29965 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC12.98□□□□□ -0.33
CD40LGP29965 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 PI4KAP2-201ENST00000360806 2080 ntBASIC12.98□□□□□ -0.33
CD40LGP29965 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 C2-209ENST00000452323 1999 ntTSL 2 BASIC12.98□□□□□ -0.33
CD40LGP29965 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CD40LGP29965 FOXO1B-201ENST00000504678 1527 ntBASIC12.98□□□□□ -0.33
CD40LGP29965 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.98□□□□□ -0.33
CD40LGP29965 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CD40LGP29965 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 AC018445.4-201ENST00000624066 2291 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CD40LGP29965 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CD40LGP29965 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 KRT18P13-201ENST00000400056 1290 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.97□□□□□ -0.33
CD40LGP29965 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 HTR5BP-201ENST00000430851 1154 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40LGP29965 SPDYE11-202ENST00000450699 704 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40LGP29965 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40LGP29965 AC105233.2-201ENST00000523697 349 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 AF228730.5-201ENST00000530288 346 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40LGP29965 SPDYE9P-201ENST00000570642 692 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 SAMD11P1-201ENST00000571429 661 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 SPDYE10P-202ENST00000612005 668 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 SPDYE8P-202ENST00000612377 668 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 PCDHB17P-202ENST00000623466 3066 ntBASIC12.97□□□□□ -0.33
CD40LGP29965 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40LGP29965 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40LGP29965 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.97□□□□□ -0.33
CD40LGP29965 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40LGP29965 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CD40LGP29965 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40LGP29965 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40LGP29965 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms