Protein–RNA interactions for Protein: Q9C0C9

UBE2O, (E3-independent) E2 ubiquitin-conjugating enzyme, humanhuman

Known RBP Predictions only

Length 1,292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2OQ9C0C9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.04■□□□□ 0.16
UBE2OQ9C0C9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 AC018629.1-201ENST00000623381 1736 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 TMBIM7P-203ENST00000641617 1718 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 AL360270.3-201ENST00000609118 1348 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 MIR566-201ENST00000385187 94 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 XBP1P1-201ENST00000436573 652 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 DUX4L50-201ENST00000455245 715 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 AC010632.2-201ENST00000588369 1224 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 AC002044.2-201ENST00000624910 970 ntBASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBE2OQ9C0C9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SSR4P1-203ENST00000599569 2260 ntBASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC004522.1-201ENST00000419978 654 ntBASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC063952.3-201ENST00000467756 308 ntBASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC083801.1-201ENST00000491689 358 ntBASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC140113.1-201ENST00000603467 169 ntBASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.02■□□□□ 0.16
UBE2OQ9C0C9 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 AL137784.3-201ENST00000623858 2288 ntBASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBE2OQ9C0C9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.01■□□□□ 0.15
UBE2OQ9C0C9 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
UBE2OQ9C0C9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms