Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 AC105206.1-202ENST00000314927 2368 ntBASIC14.32□□□□□ -0.12
CDH13P55290 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.32□□□□□ -0.12
CDH13P55290 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.32□□□□□ -0.12
CDH13P55290 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.32□□□□□ -0.12
CDH13P55290 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CDH13P55290 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CDH13P55290 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 AC023794.5-201ENST00000564380 2157 ntBASIC14.32□□□□□ -0.12
CDH13P55290 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH13P55290 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.31□□□□□ -0.12
CDH13P55290 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CDH13P55290 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 RN7SKP175-201ENST00000408472 289 ntBASIC14.31□□□□□ -0.12
CDH13P55290 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 PUDPP3-201ENST00000445368 636 ntBASIC14.31□□□□□ -0.12
CDH13P55290 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.31□□□□□ -0.12
CDH13P55290 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.31□□□□□ -0.12
CDH13P55290 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.31□□□□□ -0.12
CDH13P55290 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.31□□□□□ -0.12
CDH13P55290 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.31□□□□□ -0.12
CDH13P55290 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
CDH13P55290 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 FAM90A12P-201ENST00000519497 2375 ntBASIC14.31□□□□□ -0.12
CDH13P55290 FAM90A24P-201ENST00000520792 2369 ntBASIC14.31□□□□□ -0.12
CDH13P55290 AP000593.2-201ENST00000542775 1433 ntBASIC14.31□□□□□ -0.12
CDH13P55290 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDH13P55290 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms