Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 PFAS-212ENST00000625942 396 ntTSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 ACKR1-201ENST00000368121 1240 ntBASIC12.03□□□□□ -0.48
CDX1P47902 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CDX1P47902 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 KRT43P-201ENST00000434019 910 ntBASIC12.03□□□□□ -0.48
CDX1P47902 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.03□□□□□ -0.48
CDX1P47902 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 KRT17P8-201ENST00000540749 863 ntBASIC12.03□□□□□ -0.48
CDX1P47902 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 RAB43P1-201ENST00000561790 589 ntBASIC12.03□□□□□ -0.48
CDX1P47902 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 AP001063.1-201ENST00000568332 529 ntBASIC12.03□□□□□ -0.48
CDX1P47902 BTNL10-201ENST00000595971 695 ntBASIC12.03□□□□□ -0.48
CDX1P47902 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC12.03□□□□□ -0.48
CDX1P47902 AL359881.2-201ENST00000602973 570 ntBASIC12.03□□□□□ -0.48
CDX1P47902 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
CDX1P47902 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CDX1P47902 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CDX1P47902 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
CDX1P47902 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.02□□□□□ -0.48
CDX1P47902 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CDX1P47902 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms