Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX2P35548 AC007969.1-201ENST00000433675 447 ntBASIC13.98□□□□□ -0.17
MSX2P35548 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 AC023141.5-201ENST00000458585 616 ntBASIC13.98□□□□□ -0.17
MSX2P35548 AP000344.2-201ENST00000512987 629 ntBASIC13.98□□□□□ -0.17
MSX2P35548 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX2P35548 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 AC135782.3-201ENST00000562782 2105 ntBASIC13.98□□□□□ -0.17
MSX2P35548 AL596442.2-201ENST00000610240 980 ntBASIC13.98□□□□□ -0.17
MSX2P35548 GPALPP1-207ENST00000611650 899 ntBASIC13.98□□□□□ -0.17
MSX2P35548 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX2P35548 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX2P35548 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
MSX2P35548 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX2P35548 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX2P35548 AL589987.1-201ENST00000453380 819 ntBASIC13.97□□□□□ -0.17
MSX2P35548 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX2P35548 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
MSX2P35548 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX2P35548 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.97□□□□□ -0.17
MSX2P35548 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
MSX2P35548 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MSX2P35548 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 PCDHA5-203ENST00000614258 4248 ntBASIC13.97□□□□□ -0.17
MSX2P35548 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.97□□□□□ -0.17
MSX2P35548 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MSX2P35548 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MSX2P35548 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms