Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 AHCYP2-201ENST00000430630 1300 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.1□□□□□ -0.31
CLRN1P58418 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 AC006504.5-208ENST00000588784 2401 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CLRN1P58418 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.1□□□□□ -0.31
CLRN1P58418 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CLRN1P58418 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.1□□□□□ -0.31
CLRN1P58418 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 BOLA2P3-201ENST00000404566 256 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 ARSEP1-201ENST00000420443 635 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 AC112492.5-201ENST00000421897 457 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.1□□□□□ -0.31
CLRN1P58418 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 MIR4683-201ENST00000579659 81 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.1□□□□□ -0.31
CLRN1P58418 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 AC090505.1-201ENST00000430515 1834 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLRN1P58418 GRK6P1-201ENST00000400595 1711 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CLRN1P58418 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 KRT8P4-201ENST00000509735 1454 ntBASIC13.1□□□□□ -0.31
CLRN1P58418 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLRN1P58418 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.1□□□□□ -0.31
CLRN1P58418 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 KHSRPP1-201ENST00000427983 1768 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 AC006001.1-201ENST00000325130 474 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLRN1P58418 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 AL136309.1-201ENST00000403917 691 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.09□□□□□ -0.31
CLRN1P58418 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 CROCCP4-201ENST00000457096 498 ntBASIC13.09□□□□□ -0.31
CLRN1P58418 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.09□□□□□ -0.31
CLRN1P58418 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.09□□□□□ -0.31
CLRN1P58418 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.09□□□□□ -0.31
CLRN1P58418 AP003171.2-201ENST00000528208 925 ntBASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms