Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 GRPEL2P1-201ENST00000453145 339 ntBASIC13.2□□□□□ -0.3
CHD8Q9HCK8 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 HNRNPA1P56-201ENST00000505767 954 ntBASIC13.2□□□□□ -0.3
CHD8Q9HCK8 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CHD8Q9HCK8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AL161727.1-201ENST00000457409 530 ntBASIC13.19□□□□□ -0.3
CHD8Q9HCK8 GYG1-209ENST00000483267 801 ntTSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AC007622.1-201ENST00000488371 535 ntBASIC13.19□□□□□ -0.3
CHD8Q9HCK8 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AGGF1P2-201ENST00000426656 2106 ntBASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 RPS6-201ENST00000315377 863 ntTSL 3 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHD8Q9HCK8 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.18□□□□□ -0.3
CHD8Q9HCK8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 RN7SL677P-201ENST00000466970 319 ntBASIC13.18□□□□□ -0.3
CHD8Q9HCK8 AC093300.1-201ENST00000510368 1201 ntBASIC13.18□□□□□ -0.3
CHD8Q9HCK8 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 MT3-202ENST00000561640 514 ntTSL 3 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 TUBA3GP-201ENST00000410028 1325 ntBASIC13.18□□□□□ -0.3
CHD8Q9HCK8 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 AC090616.6-203ENST00000579186 1945 ntBASIC13.18□□□□□ -0.3
CHD8Q9HCK8 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CHD8Q9HCK8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms