Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 RN7SKP175-201ENST00000408472 289 ntBASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 BX088702.1-201ENST00000610784 235 ntBASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AL137784.3-201ENST00000623858 2288 ntBASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ATG4AQ8WYN0 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 PUDPP3-201ENST00000445368 636 ntBASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 TDH-203ENST00000531764 1110 ntBASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 ECM1P1-201ENST00000604092 1279 ntBASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 AC005252.3-201ENST00000623855 2258 ntBASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ATG4AQ8WYN0 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ATG4AQ8WYN0 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
ATG4AQ8WYN0 AP000593.2-201ENST00000542775 1433 ntBASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 1689.6 ms