Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 AC021016.3-201ENST00000608367 477 ntBASIC17.5■□□□□ 0.39
RFX7Q2KHR2 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 YRDCP1-201ENST00000621419 643 ntBASIC17.5■□□□□ 0.39
RFX7Q2KHR2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RFX7Q2KHR2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 OR2K2-202ENST00000374428 1038 ntBASIC17.49■□□□□ 0.39
RFX7Q2KHR2 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 AC069218.1-201ENST00000435269 762 ntBASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PGAM1P5-201ENST00000548011 764 ntBASIC17.49■□□□□ 0.39
RFX7Q2KHR2 MIR3677-201ENST00000578964 60 ntBASIC17.49■□□□□ 0.39
RFX7Q2KHR2 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX7Q2KHR2 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 AL109837.1-201ENST00000603272 613 ntBASIC17.48■□□□□ 0.39
RFX7Q2KHR2 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX7Q2KHR2 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX7Q2KHR2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms