Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL12P48061 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.35□□□□□ -0.11
CXCL12P48061 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
CXCL12P48061 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CXCL12P48061 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL12P48061 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL12P48061 PCDHA1-201ENST00000378133 2726 ntBASIC14.35□□□□□ -0.11
CXCL12P48061 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CXCL12P48061 AL109809.1-201ENST00000418979 1367 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 AC004554.1-201ENST00000422830 1468 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 AC136621.1-201ENST00000624017 2304 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL12P48061 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL12P48061 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CXCL12P48061 HNRNPA1P58-201ENST00000403629 610 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 PPP1R2P4-201ENST00000424051 595 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC14.34□□□□□ -0.11
CXCL12P48061 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.34□□□□□ -0.11
CXCL12P48061 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 IGHV1-12-201ENST00000518307 205 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CXCL12P48061 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC14.34□□□□□ -0.11
CXCL12P48061 AC013553.1-201ENST00000560906 267 ntBASIC14.34□□□□□ -0.11
CXCL12P48061 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 MME-218ENST00000625667 363 ntTSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.34□□□□□ -0.11
CXCL12P48061 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CXCL12P48061 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL12P48061 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL12P48061 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.33□□□□□ -0.11
CXCL12P48061 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL12P48061 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.33□□□□□ -0.11
CXCL12P48061 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.33□□□□□ -0.11
CXCL12P48061 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL12P48061 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL12P48061 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CXCL12P48061 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.33□□□□□ -0.11
CXCL12P48061 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 AL357373.1-201ENST00000394974 322 ntBASIC14.33□□□□□ -0.12
CXCL12P48061 LINC00265-2P-201ENST00000413372 782 ntBASIC14.33□□□□□ -0.12
CXCL12P48061 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.33□□□□□ -0.12
CXCL12P48061 BPIFB5P-201ENST00000457066 1099 ntBASIC14.33□□□□□ -0.12
CXCL12P48061 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL12P48061 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC14.33□□□□□ -0.12
CXCL12P48061 GDNF-207ENST00000515058 764 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CXCL12P48061 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.33□□□□□ -0.12
CXCL12P48061 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.33□□□□□ -0.12
CXCL12P48061 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 AL118508.1-201ENST00000613502 2345 ntBASIC14.33□□□□□ -0.12
CXCL12P48061 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL12P48061 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
CXCL12P48061 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms