Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.73■□□□□ 0.43
COL5A3P25940 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
COL5A3P25940 GARS-210ENST00000627489 324 ntTSL 4 BASIC17.73■□□□□ 0.43
COL5A3P25940 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 AC020931.1-201ENST00000589622 1346 ntBASIC17.73■□□□□ 0.43
COL5A3P25940 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL5A3P25940 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 PGK1P2-201ENST00000431702 1214 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 AC023906.1-201ENST00000486386 453 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 AC112250.1-201ENST00000504640 745 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.72■□□□□ 0.43
COL5A3P25940 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC17.72■□□□□ 0.43
COL5A3P25940 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A3P25940 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
COL5A3P25940 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.72■□□□□ 0.43
COL5A3P25940 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL5A3P25940 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL5A3P25940 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC17.72■□□□□ 0.43
COL5A3P25940 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL5A3P25940 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.72■□□□□ 0.43
COL5A3P25940 BAK1P2-201ENST00000532665 631 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 AC006116.2-201ENST00000589958 988 ntBASIC17.72■□□□□ 0.43
COL5A3P25940 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.72■□□□□ 0.43
COL5A3P25940 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A3P25940 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL5A3P25940 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A3P25940 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A3P25940 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.71■□□□□ 0.43
COL5A3P25940 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL5A3P25940 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
COL5A3P25940 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.71■□□□□ 0.42
COL5A3P25940 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL5A3P25940 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.71■□□□□ 0.42
COL5A3P25940 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC17.71■□□□□ 0.42
COL5A3P25940 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A3P25940 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms