Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DNM1P30-201ENST00000563586 452 ntBASIC14.99□□□□□ -0.01
HMGA1P17096 AC135983.4-201ENST00000564116 1262 ntBASIC14.99□□□□□ -0.01
HMGA1P17096 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
HMGA1P17096 AP003419.4-201ENST00000616071 517 ntBASIC14.99□□□□□ -0.01
HMGA1P17096 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGA1P17096 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGA1P17096 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGA1P17096 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGA1P17096 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGA1P17096 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 AP001267.2-201ENST00000532619 2086 ntBASIC14.99□□□□□ -0.01
HMGA1P17096 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGA1P17096 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGA1P17096 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGA1P17096 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.98□□□□□ -0.01
HMGA1P17096 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.98□□□□□ -0.01
HMGA1P17096 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.98□□□□□ -0.01
HMGA1P17096 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGA1P17096 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGA1P17096 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.98□□□□□ -0.01
HMGA1P17096 AC025262.2-201ENST00000623975 1056 ntBASIC14.98□□□□□ -0.01
HMGA1P17096 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 AC090505.1-201ENST00000430515 1834 ntBASIC14.98□□□□□ -0.01
HMGA1P17096 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HMGA1P17096 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGA1P17096 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGA1P17096 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC14.98□□□□□ -0.01
HMGA1P17096 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGA1P17096 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGA1P17096 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
HMGA1P17096 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.97□□□□□ -0.01
HMGA1P17096 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGA1P17096 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.97□□□□□ -0.01
HMGA1P17096 LDHBP1-201ENST00000455730 1119 ntBASIC14.97□□□□□ -0.01
HMGA1P17096 RPL18AP8-201ENST00000486071 528 ntBASIC14.97□□□□□ -0.01
HMGA1P17096 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.97□□□□□ -0.01
HMGA1P17096 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.97□□□□□ -0.01
HMGA1P17096 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.97□□□□□ -0.01
HMGA1P17096 RN7SL736P-201ENST00000613111 269 ntBASIC14.97□□□□□ -0.01
HMGA1P17096 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
HMGA1P17096 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
HMGA1P17096 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.97□□□□□ -0.01
HMGA1P17096 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
HMGA1P17096 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
HMGA1P17096 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGA1P17096 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGA1P17096 AC067931.2-201ENST00000623655 2003 ntBASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms