Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 ACTG1P19-201ENST00000418987 1116 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 KRT18P46-201ENST00000435568 1279 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
COL11A1P12107 AC226150.1-201ENST00000544259 466 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.17■□□□□ 0.18
COL11A1P12107 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 FUCA1P1-201ENST00000374476 1351 ntBASIC16.16■□□□□ 0.18
COL11A1P12107 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
COL11A1P12107 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL11A1P12107 RNVU1-8-201ENST00000364272 125 ntBASIC16.16■□□□□ 0.18
COL11A1P12107 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL11A1P12107 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.16■□□□□ 0.18
COL11A1P12107 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 AC073210.1-201ENST00000414799 232 ntBASIC16.16■□□□□ 0.18
COL11A1P12107 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.16■□□□□ 0.18
COL11A1P12107 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC16.16■□□□□ 0.18
COL11A1P12107 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL11A1P12107 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC16.16■□□□□ 0.18
COL11A1P12107 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.16■□□□□ 0.18
COL11A1P12107 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
COL11A1P12107 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
COL11A1P12107 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL11A1P12107 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL11A1P12107 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 KRT17P4-201ENST00000429445 819 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 GCSHP3-201ENST00000431120 391 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.15■□□□□ 0.18
COL11A1P12107 AC093826.1-201ENST00000508655 993 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC16.15■□□□□ 0.18
COL11A1P12107 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC16.15■□□□□ 0.18
COL11A1P12107 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.15■□□□□ 0.18
COL11A1P12107 AP005264.6-204ENST00000588436 719 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 SHMT1P1-201ENST00000419974 1312 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL11A1P12107 COX20P1-201ENST00000366529 357 ntBASIC16.15■□□□□ 0.18
COL11A1P12107 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL11A1P12107 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC16.15■□□□□ 0.18
COL11A1P12107 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms