Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RPAP1Q9BWH6 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 CEP164P1-201ENST00000455142 418 ntBASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 AL136172.1-201ENST00000598590 1394 ntBASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.68■□□□□ 0.42
RPAP1Q9BWH6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC078875.1-201ENST00000431907 724 ntBASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 KLF2P1-201ENST00000447438 1042 ntBASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC090857.1-201ENST00000527400 390 ntBASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 MIR6727-201ENST00000620702 65 ntBASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 NAP1L6-202ENST00000641404 1222 ntBASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RPAP1Q9BWH6 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms