Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.23□□□□□ -0.29
SUMO3P55854 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.23□□□□□ -0.29
SUMO3P55854 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.23□□□□□ -0.29
SUMO3P55854 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.23□□□□□ -0.29
SUMO3P55854 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.23□□□□□ -0.29
SUMO3P55854 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SUMO3P55854 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.23□□□□□ -0.29
SUMO3P55854 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SUMO3P55854 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 TUBB8P4-201ENST00000511806 1324 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 BRWD1P1-201ENST00000401091 371 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
SUMO3P55854 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.22□□□□□ -0.29
SUMO3P55854 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
SUMO3P55854 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 AC005730.2-201ENST00000564549 1184 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.22□□□□□ -0.29
SUMO3P55854 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 AC091271.1-201ENST00000611877 1162 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 AL136295.7-201ENST00000619226 1200 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 AL033527.4-201ENST00000641026 673 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 LAP3P2-201ENST00000454686 1454 ntBASIC13.22□□□□□ -0.29
SUMO3P55854 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.22□□□□□ -0.29
SUMO3P55854 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SUMO3P55854 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SUMO3P55854 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.21□□□□□ -0.29
SUMO3P55854 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 USP17L6P-201ENST00000382470 1197 ntBASIC13.21□□□□□ -0.29
SUMO3P55854 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms