Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 AC097359.2-201ENST00000604992 2389 ntBASIC15.73■□□□□ 0.11
VCPP55072 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
VCPP55072 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.73■□□□□ 0.11
VCPP55072 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.73■□□□□ 0.11
VCPP55072 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.73■□□□□ 0.11
VCPP55072 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.73■□□□□ 0.11
VCPP55072 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.73■□□□□ 0.11
VCPP55072 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 CYP51A1P3-201ENST00000400072 1428 ntBASIC15.73■□□□□ 0.11
VCPP55072 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
VCPP55072 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VCPP55072 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCPP55072 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 AP001267.2-201ENST00000532619 2086 ntBASIC15.72■□□□□ 0.11
VCPP55072 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VCPP55072 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 TPM3P8-201ENST00000330554 643 ntBASIC15.72■□□□□ 0.11
VCPP55072 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.72■□□□□ 0.11
VCPP55072 HLA-K-203ENST00000430151 1046 ntBASIC15.72■□□□□ 0.11
VCPP55072 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 RN7SL8P-201ENST00000461771 266 ntBASIC15.72■□□□□ 0.11
VCPP55072 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.72■□□□□ 0.11
VCPP55072 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VCPP55072 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.72■□□□□ 0.11
VCPP55072 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCPP55072 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCPP55072 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms