Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.04□□□□□ -0.16
MSX2P35548 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.04□□□□□ -0.16
MSX2P35548 POLD2P1-201ENST00000511220 997 ntBASIC14.04□□□□□ -0.16
MSX2P35548 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 SPDYE12P-201ENST00000618416 771 ntBASIC14.04□□□□□ -0.16
MSX2P35548 AC009093.7-201ENST00000623853 1223 ntBASIC14.04□□□□□ -0.16
MSX2P35548 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
MSX2P35548 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
MSX2P35548 AC125807.2-201ENST00000513358 3514 ntBASIC14.03□□□□□ -0.16
MSX2P35548 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
MSX2P35548 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.03□□□□□ -0.16
MSX2P35548 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
MSX2P35548 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.03□□□□□ -0.16
MSX2P35548 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX2P35548 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX2P35548 AC026434.2-201ENST00000506094 1078 ntBASIC14.03□□□□□ -0.16
MSX2P35548 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX2P35548 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX2P35548 MIR4469-201ENST00000583919 79 ntBASIC14.03□□□□□ -0.16
MSX2P35548 AC092364.2-202ENST00000597012 1073 ntBASIC14.03□□□□□ -0.16
MSX2P35548 AL138828.2-201ENST00000615812 383 ntBASIC14.03□□□□□ -0.16
MSX2P35548 AL158212.4-201ENST00000624062 1286 ntBASIC14.03□□□□□ -0.16
MSX2P35548 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.03□□□□□ -0.16
MSX2P35548 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX2P35548 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 CR383656.2-201ENST00000548656 2254 ntBASIC14.03□□□□□ -0.16
MSX2P35548 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
MSX2P35548 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX2P35548 AL645937.6-201ENST00000641122 3727 ntBASIC14.02□□□□□ -0.16
MSX2P35548 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.02□□□□□ -0.16
MSX2P35548 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX2P35548 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
MSX2P35548 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX2P35548 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 AC004945.1-201ENST00000416738 983 ntBASIC14.02□□□□□ -0.17
MSX2P35548 SPDYE7P-202ENST00000420373 878 ntBASIC14.02□□□□□ -0.17
MSX2P35548 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX2P35548 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX2P35548 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX2P35548 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX2P35548 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms