Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 AL662890.1-201ENST00000396818 632 ntBASIC13.47□□□□□ -0.25
MSX1P28360 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.47□□□□□ -0.25
MSX1P28360 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.47□□□□□ -0.25
MSX1P28360 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.47□□□□□ -0.25
MSX1P28360 FNTAP2-201ENST00000430308 634 ntBASIC13.47□□□□□ -0.25
MSX1P28360 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 POM121L10P-201ENST00000436994 1285 ntBASIC13.47□□□□□ -0.25
MSX1P28360 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.47□□□□□ -0.25
MSX1P28360 AC005077.2-201ENST00000449786 690 ntBASIC13.47□□□□□ -0.25
MSX1P28360 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 AC022447.6-201ENST00000515522 438 ntBASIC13.47□□□□□ -0.25
MSX1P28360 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.47□□□□□ -0.25
MSX1P28360 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 ADM-202ENST00000524948 584 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 MIR6074-201ENST00000612054 107 ntBASIC13.47□□□□□ -0.25
MSX1P28360 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
MSX1P28360 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 SHC1P1-201ENST00000425230 1745 ntBASIC13.47□□□□□ -0.25
MSX1P28360 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
MSX1P28360 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.47□□□□□ -0.25
MSX1P28360 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.46□□□□□ -0.25
MSX1P28360 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.46□□□□□ -0.25
MSX1P28360 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.46□□□□□ -0.25
MSX1P28360 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.46□□□□□ -0.25
MSX1P28360 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.46□□□□□ -0.25
MSX1P28360 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.46□□□□□ -0.25
MSX1P28360 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.46□□□□□ -0.25
MSX1P28360 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.46□□□□□ -0.25
MSX1P28360 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.46□□□□□ -0.25
MSX1P28360 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.46□□□□□ -0.25
MSX1P28360 AC015967.2-201ENST00000624092 234 ntBASIC13.46□□□□□ -0.25
MSX1P28360 AC006435.4-201ENST00000625037 234 ntBASIC13.46□□□□□ -0.25
MSX1P28360 AL356737.1-201ENST00000634391 234 ntBASIC13.46□□□□□ -0.25
MSX1P28360 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
MSX1P28360 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.46□□□□□ -0.25
MSX1P28360 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 AC040160.2-201ENST00000623816 1675 ntBASIC13.46□□□□□ -0.26
MSX1P28360 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
MSX1P28360 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.26
MSX1P28360 AC015688.4-201ENST00000580780 1647 ntBASIC13.46□□□□□ -0.26
MSX1P28360 FAM45BP-202ENST00000592932 1624 ntBASIC13.46□□□□□ -0.26
MSX1P28360 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
MSX1P28360 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MSX1P28360 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
MSX1P28360 AL590440.2-201ENST00000641973 1595 ntBASIC13.45□□□□□ -0.26
MSX1P28360 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.45□□□□□ -0.26
MSX1P28360 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MSX1P28360 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.45□□□□□ -0.26
MSX1P28360 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms