Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.92□□□□□ -0.18
LIM2P55344 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.92□□□□□ -0.18
LIM2P55344 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.92□□□□□ -0.18
LIM2P55344 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.92□□□□□ -0.18
LIM2P55344 DUX4L46-201ENST00000566845 751 ntBASIC13.92□□□□□ -0.18
LIM2P55344 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 RN7SL560P-201ENST00000577943 264 ntBASIC13.92□□□□□ -0.18
LIM2P55344 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.92□□□□□ -0.18
LIM2P55344 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.92□□□□□ -0.18
LIM2P55344 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 AC010327.5-201ENST00000586923 3061 ntBASIC13.92□□□□□ -0.18
LIM2P55344 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 KRT8P28-201ENST00000433288 1390 ntBASIC13.92□□□□□ -0.18
LIM2P55344 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LIM2P55344 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LIM2P55344 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.91□□□□□ -0.18
LIM2P55344 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LIM2P55344 RPS2P32-201ENST00000439199 892 ntBASIC13.91□□□□□ -0.18
LIM2P55344 Z93015.1-201ENST00000451718 390 ntBASIC13.91□□□□□ -0.18
LIM2P55344 RPL13AP20-201ENST00000459725 609 ntBASIC13.91□□□□□ -0.18
LIM2P55344 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.91□□□□□ -0.18
LIM2P55344 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.91□□□□□ -0.18
LIM2P55344 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 AC132192.2-201ENST00000596206 1147 ntBASIC13.91□□□□□ -0.18
LIM2P55344 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.91□□□□□ -0.18
LIM2P55344 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 BEND3P1-201ENST00000421591 1944 ntBASIC13.91□□□□□ -0.18
LIM2P55344 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.91□□□□□ -0.18
LIM2P55344 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.91□□□□□ -0.18
LIM2P55344 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIM2P55344 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AC215219.1-201ENST00000400706 1817 ntBASIC13.9□□□□□ -0.18
LIM2P55344 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms