Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.38□□□□□ -0.11
CXCL12P48061 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 RNVU1-8-201ENST00000364272 125 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CXCL12P48061 ACTBP7-201ENST00000418351 1124 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.38□□□□□ -0.11
CXCL12P48061 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 GRPEL2P1-201ENST00000453145 339 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 AC026470.1-201ENST00000478038 846 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.38□□□□□ -0.11
CXCL12P48061 AC090136.2-201ENST00000517809 420 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.38□□□□□ -0.11
CXCL12P48061 SNORD3B-1-201ENST00000577988 758 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.38□□□□□ -0.11
CXCL12P48061 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.38□□□□□ -0.11
CXCL12P48061 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 AL359091.4-201ENST00000610052 409 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CXCL12P48061 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 TMBIM7P-203ENST00000641617 1718 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 ZNF436-AS1-201ENST00000335648 2547 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 FUCA1P1-201ENST00000374476 1351 ntBASIC14.37□□□□□ -0.11
CXCL12P48061 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 AP000354.1-201ENST00000396982 456 ntBASIC14.37□□□□□ -0.11
CXCL12P48061 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.37□□□□□ -0.11
CXCL12P48061 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC083801.1-201ENST00000491689 358 ntBASIC14.37□□□□□ -0.11
CXCL12P48061 CISD2-202ENST00000503643 808 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 AC095040.1-201ENST00000513286 675 ntBASIC14.37□□□□□ -0.11
CXCL12P48061 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC14.37□□□□□ -0.11
CXCL12P48061 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 CYP4F36P-201ENST00000589193 186 ntBASIC14.37□□□□□ -0.11
CXCL12P48061 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
CXCL12P48061 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL12P48061 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CXCL12P48061 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL12P48061 AC011270.2-201ENST00000624293 2550 ntBASIC14.36□□□□□ -0.11
CXCL12P48061 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.36□□□□□ -0.11
CXCL12P48061 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL12P48061 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL12P48061 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL12P48061 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms