Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 INTS4P2-202ENST00000614726 2019 ntBASIC12.1□□□□□ -0.47
CDX1P47902 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.1□□□□□ -0.47
CDX1P47902 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 SOCS2P1-201ENST00000417727 557 ntBASIC12.1□□□□□ -0.47
CDX1P47902 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.1□□□□□ -0.47
CDX1P47902 TTTY23B-201ENST00000442790 549 ntBASIC12.1□□□□□ -0.47
CDX1P47902 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 NAA50-208ENST00000497255 789 ntTSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.1□□□□□ -0.47
CDX1P47902 AC106886.1-201ENST00000568660 600 ntBASIC12.1□□□□□ -0.47
CDX1P47902 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.1□□□□□ -0.47
CDX1P47902 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.1□□□□□ -0.47
CDX1P47902 AC015936.2-201ENST00000593177 259 ntBASIC12.1□□□□□ -0.47
CDX1P47902 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.1□□□□□ -0.47
CDX1P47902 AL049840.4-201ENST00000602422 811 ntBASIC12.1□□□□□ -0.47
CDX1P47902 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 IGHV3-72-202ENST00000621503 303 ntBASIC12.1□□□□□ -0.47
CDX1P47902 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CDX1P47902 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.1□□□□□ -0.47
CDX1P47902 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.1□□□□□ -0.47
CDX1P47902 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 APOA1-205ENST00000375329 927 ntTSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.09□□□□□ -0.47
CDX1P47902 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.09□□□□□ -0.47
CDX1P47902 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC12.09□□□□□ -0.47
CDX1P47902 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.09□□□□□ -0.47
CDX1P47902 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.09□□□□□ -0.47
CDX1P47902 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.09□□□□□ -0.47
CDX1P47902 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.09□□□□□ -0.47
CDX1P47902 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.09□□□□□ -0.47
CDX1P47902 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
CDX1P47902 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CDX1P47902 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms