Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC18.6■□□□□ 0.57
RXRBP28702 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
RXRBP28702 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RXRBP28702 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC18.6■□□□□ 0.57
RXRBP28702 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC18.6■□□□□ 0.57
RXRBP28702 HLA-DQB3-203ENST00000425319 356 ntBASIC18.6■□□□□ 0.57
RXRBP28702 HNRNPA3P12-201ENST00000437410 1063 ntBASIC18.6■□□□□ 0.57
RXRBP28702 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC18.6■□□□□ 0.57
RXRBP28702 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 AC233724.9-201ENST00000511694 407 ntBASIC18.6■□□□□ 0.57
RXRBP28702 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC18.6■□□□□ 0.57
RXRBP28702 AC123912.6-201ENST00000612657 315 ntBASIC18.6■□□□□ 0.57
RXRBP28702 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC18.6■□□□□ 0.57
RXRBP28702 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RXRBP28702 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RXRBP28702 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RXRBP28702 AC099398.1-201ENST00000567919 2776 ntBASIC18.59■□□□□ 0.57
RXRBP28702 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.59■□□□□ 0.57
RXRBP28702 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RXRBP28702 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RXRBP28702 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.59■□□□□ 0.57
RXRBP28702 RPL30-213ENST00000523172 274 ntTSL 5 BASIC18.59■□□□□ 0.57
RXRBP28702 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC18.59■□□□□ 0.57
RXRBP28702 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC18.59■□□□□ 0.57
RXRBP28702 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RXRBP28702 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC18.59■□□□□ 0.57
RXRBP28702 FAM223B-202ENST00000598177 713 ntBASIC18.59■□□□□ 0.57
RXRBP28702 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC18.59■□□□□ 0.57
RXRBP28702 AC010335.3-201ENST00000623767 531 ntBASIC18.59■□□□□ 0.57
RXRBP28702 FAM223A-202ENST00000625204 713 ntBASIC18.59■□□□□ 0.57
RXRBP28702 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RXRBP28702 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
RXRBP28702 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RXRBP28702 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
RXRBP28702 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC18.58■□□□□ 0.57
RXRBP28702 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 AP000845.1-201ENST00000581677 2131 ntBASIC18.58■□□□□ 0.57
RXRBP28702 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
RXRBP28702 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.58■□□□□ 0.57
RXRBP28702 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RXRBP28702 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 MKL1-204ENST00000402630 747 ntTSL 2 BASIC18.58■□□□□ 0.56
RXRBP28702 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC18.58■□□□□ 0.56
RXRBP28702 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC18.58■□□□□ 0.56
RXRBP28702 HNRNPA1P73-201ENST00000446472 928 ntBASIC18.58■□□□□ 0.56
RXRBP28702 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC18.58■□□□□ 0.56
RXRBP28702 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 AC112694.1-202ENST00000540985 943 ntBASIC18.58■□□□□ 0.56
RXRBP28702 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC18.58■□□□□ 0.56
RXRBP28702 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RXRBP28702 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 AC008620.2-201ENST00000510294 1569 ntBASIC18.58■□□□□ 0.56
RXRBP28702 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
RXRBP28702 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RXRBP28702 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
RXRBP28702 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC18.57■□□□□ 0.56
RXRBP28702 AC092115.1-201ENST00000566277 1402 ntBASIC18.57■□□□□ 0.56
RXRBP28702 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RXRBP28702 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RXRBP28702 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RXRBP28702 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC18.57■□□□□ 0.56
RXRBP28702 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.57■□□□□ 0.56
RXRBP28702 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RXRBP28702 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.57■□□□□ 0.56
RXRBP28702 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms