Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RB1P06400 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 AC132872.4-202ENST00000622924 2756 ntBASIC15.35■□□□□ 0.05
RB1P06400 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RB1P06400 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 PYY2-201ENST00000315776 282 ntBASIC15.35■□□□□ 0.05
RB1P06400 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 SCARNA12-201ENST00000459155 270 ntBASIC15.35■□□□□ 0.05
RB1P06400 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC15.35■□□□□ 0.05
RB1P06400 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC15.35■□□□□ 0.05
RB1P06400 LINC00244-201ENST00000625073 613 ntBASIC15.35■□□□□ 0.05
RB1P06400 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 BRD7P5-201ENST00000299197 1822 ntBASIC15.35■□□□□ 0.05
RB1P06400 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.35■□□□□ 0.05
RB1P06400 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RB1P06400 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RB1P06400 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.35■□□□□ 0.05
RB1P06400 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 TMBIM7P-203ENST00000641617 1718 ntBASIC15.34■□□□□ 0.05
RB1P06400 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 PAUPAR-201ENST00000630360 2965 ntBASIC15.34■□□□□ 0.05
RB1P06400 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RB1P06400 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC15.34■□□□□ 0.05
RB1P06400 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC15.34■□□□□ 0.05
RB1P06400 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 ACTG1P19-201ENST00000418987 1116 ntBASIC15.34■□□□□ 0.05
RB1P06400 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.34■□□□□ 0.05
RB1P06400 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.34■□□□□ 0.05
RB1P06400 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RB1P06400 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.34■□□□□ 0.05
RB1P06400 RNA5SP406-201ENST00000516106 112 ntBASIC15.34■□□□□ 0.05
RB1P06400 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC15.34■□□□□ 0.05
RB1P06400 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.34■□□□□ 0.05
RB1P06400 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC15.34■□□□□ 0.05
RB1P06400 AL118516.1-201ENST00000564152 670 ntBASIC15.34■□□□□ 0.05
RB1P06400 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC15.34■□□□□ 0.05
RB1P06400 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 AL133467.4-201ENST00000602953 725 ntBASIC15.34■□□□□ 0.05
RB1P06400 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
RB1P06400 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms