Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GOLGA8IP-202ENST00000611635 2100 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC004870.1-201ENST00000315132 882 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 HLA-K-203ENST00000430151 1046 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RPL13P2-201ENST00000440687 659 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 KRT18P56-201ENST00000507275 550 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RNA5SP416-201ENST00000516838 111 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC025048.3-201ENST00000590609 569 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC005702.4-201ENST00000618393 416 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC055717.3-201ENST00000622967 595 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC084121.4-201ENST00000641598 221 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AF228730.8-201ENST00000642140 221 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TNRC18P1-201ENST00000502875 3650 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CLK3P2-201ENST00000427566 1453 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 AC011840.2-201ENST00000563063 1520 ntBASIC10.79□□□□□ -0.68
SMKR1H3BMG3 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 FOS-202ENST00000535987 1402 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms