Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AL157414.3-201ENST00000624276 1954 ntBASIC14.36□□□□□ -0.11
VPS4AQ9UN37 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 GAPDHP40-201ENST00000505218 1006 ntBASIC14.35□□□□□ -0.11
VPS4AQ9UN37 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 AC009542.2-202ENST00000619004 1067 ntBASIC14.35□□□□□ -0.11
VPS4AQ9UN37 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 AC041040.2-201ENST00000622926 2899 ntBASIC14.35□□□□□ -0.11
VPS4AQ9UN37 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS4AQ9UN37 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AC027601.5-201ENST00000624065 2482 ntBASIC14.34□□□□□ -0.11
VPS4AQ9UN37 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AC005252.3-201ENST00000623855 2258 ntBASIC14.34□□□□□ -0.11
VPS4AQ9UN37 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 FTH1P14-201ENST00000482930 551 ntBASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 RHOXF1P1-202ENST00000635473 501 ntBASIC14.34□□□□□ -0.11
VPS4AQ9UN37 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS4AQ9UN37 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms