Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 BCYRN1-201ENST00000418539 200 ntBASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4AQ9BY43 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 OR2I1P-210ENST00000642037 4691 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AC239868.1-201ENST00000369385 493 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 KRT18P36-201ENST00000411618 1276 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL353637.1-201ENST00000451571 732 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 HIST2H2BC-201ENST00000498492 580 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AC064801.2-201ENST00000625052 1303 ntBASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms