Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AL583805.1-201ENST00000391389 531 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AC092580.1-201ENST00000433998 658 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 RPSAP15-201ENST00000448168 861 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 RN7SL277P-201ENST00000481521 288 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 NDUFS6P1-201ENST00000485187 316 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AC138894.2-201ENST00000602838 371 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 U62317.3-201ENST00000608319 855 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 AC051619.9-201ENST00000623237 597 ntBASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PAAF1Q9BRP4 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 MIR557-201ENST00000385239 98 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 RPS9P1-201ENST00000419943 583 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 DUX4L50-201ENST00000455245 715 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 AP000358.1-201ENST00000456260 156 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 RN7SL555P-201ENST00000584742 339 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 AL805961.1-201ENST00000642026 753 ntBASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.52■□□□□ 0.08
PAAF1Q9BRP4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms