Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.73■□□□□ 0.27
SMARCA1P28370 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 AC007191.1-201ENST00000623179 2995 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.72■□□□□ 0.27
SMARCA1P28370 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 TSPY25P-201ENST00000429463 745 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 AC092580.1-201ENST00000433998 658 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.72■□□□□ 0.27
SMARCA1P28370 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.72■□□□□ 0.27
SMARCA1P28370 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.72■□□□□ 0.27
SMARCA1P28370 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.72■□□□□ 0.27
SMARCA1P28370 NAP1L6-202ENST00000641404 1222 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.72■□□□□ 0.27
SMARCA1P28370 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
SMARCA1P28370 AP002353.1-201ENST00000528257 1599 ntBASIC16.72■□□□□ 0.27
SMARCA1P28370 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.72■□□□□ 0.27
SMARCA1P28370 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SMARCA1P28370 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 AL136379.1-201ENST00000623471 2642 ntBASIC16.71■□□□□ 0.27
SMARCA1P28370 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 AC239868.1-201ENST00000369385 493 ntBASIC16.71■□□□□ 0.27
SMARCA1P28370 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SMARCA1P28370 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.71■□□□□ 0.27
SMARCA1P28370 AL596276.2-201ENST00000447525 331 ntBASIC16.71■□□□□ 0.27
SMARCA1P28370 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.71■□□□□ 0.27
SMARCA1P28370 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.71■□□□□ 0.27
SMARCA1P28370 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 MIR3619-201ENST00000579667 83 ntBASIC16.71■□□□□ 0.27
SMARCA1P28370 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.71■□□□□ 0.27
SMARCA1P28370 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SMARCA1P28370 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SMARCA1P28370 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.71■□□□□ 0.27
SMARCA1P28370 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SMARCA1P28370 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms