Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP1AQ9HD42 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP1AQ9HD42 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 AC018755.3-202ENST00000596210 929 ntBASIC19.44■□□□□ 0.7
CHMP1AQ9HD42 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP1AQ9HD42 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP1AQ9HD42 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP1AQ9HD42 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 RPS2P7-201ENST00000447334 885 ntBASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 RNF126P1-201ENST00000567452 1320 ntBASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP1AQ9HD42 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP1AQ9HD42 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP1AQ9HD42 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP1AQ9HD42 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.39■□□□□ 0.7
CHMP1AQ9HD42 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP1AQ9HD42 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CHMP1AQ9HD42 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms