Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 SPCS2P3-201ENST00000500401 656 ntBASIC13.43□□□□□ -0.26
LIMD2Q9BT23 BHLHE23-202ENST00000612929 1109 ntBASIC13.43□□□□□ -0.26
LIMD2Q9BT23 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LIMD2Q9BT23 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 LINC01124-201ENST00000409786 2117 ntBASIC13.42□□□□□ -0.26
LIMD2Q9BT23 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 KRT18P60-201ENST00000312876 1297 ntBASIC13.42□□□□□ -0.26
LIMD2Q9BT23 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 AC011551.1-201ENST00000614101 683 ntBASIC13.42□□□□□ -0.26
LIMD2Q9BT23 AC074183.2-201ENST00000623112 922 ntBASIC13.42□□□□□ -0.26
LIMD2Q9BT23 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LIMD2Q9BT23 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MTX2-204ENST00000443241 799 ntTSL 3 BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 AC090877.2-201ENST00000558441 1738 ntBASIC13.41□□□□□ -0.26
LIMD2Q9BT23 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC13.41□□□□□ -0.26
LIMD2Q9BT23 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 AC019171.1-201ENST00000601251 1056 ntBASIC13.4□□□□□ -0.26
LIMD2Q9BT23 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LIMD2Q9BT23 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 AL161729.1-201ENST00000604104 1402 ntBASIC13.39□□□□□ -0.27
LIMD2Q9BT23 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 LONRF2P2-201ENST00000439212 571 ntBASIC13.39□□□□□ -0.27
LIMD2Q9BT23 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 MED17-221ENST00000639724 2317 ntTSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
LIMD2Q9BT23 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC13.38□□□□□ -0.27
LIMD2Q9BT23 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
LIMD2Q9BT23 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LIMD2Q9BT23 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LIMD2Q9BT23 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LIMD2Q9BT23 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LIMD2Q9BT23 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms