Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC29.25■■■□□ 2.27
COL5A3P25940 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.25■■■□□ 2.27
COL5A3P25940 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL5A3P25940 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL5A3P25940 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL5A3P25940 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL5A3P25940 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L2-201ENST00000561772 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.24■■■□□ 2.27
COL5A3P25940 MIR3181-201ENST00000578512 73 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L6-201ENST00000626483 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L1-201ENST00000627662 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L8-201ENST00000629013 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L3-201ENST00000630187 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L7-201ENST00000630678 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 DUX4L5-201ENST00000630834 1275 ntBASIC29.24■■■□□ 2.27
COL5A3P25940 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL5A3P25940 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL5A3P25940 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC29.24■■■□□ 2.27
COL5A3P25940 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC29.23■■■□□ 2.27
COL5A3P25940 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.23■■■□□ 2.27
COL5A3P25940 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 AC092437.1-201ENST00000624794 1048 ntBASIC29.23■■■□□ 2.27
COL5A3P25940 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
COL5A3P25940 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.23■■■□□ 2.27
COL5A3P25940 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL5A3P25940 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC29.23■■■□□ 2.27
COL5A3P25940 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.23■■■□□ 2.27
COL5A3P25940 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL5A3P25940 RARRES2P11-201ENST00000635158 484 ntBASIC29.22■■■□□ 2.27
COL5A3P25940 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.22■■■□□ 2.27
COL5A3P25940 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.22■■■□□ 2.27
COL5A3P25940 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL5A3P25940 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.21■■■□□ 2.27
COL5A3P25940 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.21■■■□□ 2.27
COL5A3P25940 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC29.21■■■□□ 2.27
COL5A3P25940 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
COL5A3P25940 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.2■■■□□ 2.27
COL5A3P25940 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.2■■■□□ 2.27
COL5A3P25940 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
COL5A3P25940 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC29.2■■■□□ 2.27
COL5A3P25940 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL5A3P25940 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL5A3P25940 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
COL5A3P25940 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC29.19■■■□□ 2.26
COL5A3P25940 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.19■■■□□ 2.26
COL5A3P25940 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
COL5A3P25940 YBX1P1-201ENST00000445822 960 ntBASIC29.19■■■□□ 2.26
COL5A3P25940 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL5A3P25940 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL5A3P25940 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.18■■■□□ 2.26
COL5A3P25940 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.18■■■□□ 2.26
COL5A3P25940 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
COL5A3P25940 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL5A3P25940 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
COL5A3P25940 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.18■■■□□ 2.26
COL5A3P25940 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL5A3P25940 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL5A3P25940 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL5A3P25940 AC012414.1-201ENST00000556676 535 ntBASIC29.17■■■□□ 2.26
COL5A3P25940 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC29.17■■■□□ 2.26
COL5A3P25940 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL5A3P25940 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL5A3P25940 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL5A3P25940 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC29.17■■■□□ 2.26
COL5A3P25940 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL5A3P25940 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC29.16■■■□□ 2.26
COL5A3P25940 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
COL5A3P25940 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.16■■■□□ 2.26
COL5A3P25940 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.16■■■□□ 2.26
COL5A3P25940 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
COL5A3P25940 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
COL5A3P25940 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.16■■■□□ 2.26
COL5A3P25940 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC29.15■■■□□ 2.26
COL5A3P25940 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC29.15■■■□□ 2.26
COL5A3P25940 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.15■■■□□ 2.26
COL5A3P25940 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL5A3P25940 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.14■■■□□ 2.26
COL5A3P25940 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.14■■■□□ 2.26
COL5A3P25940 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC29.14■■■□□ 2.26
COL5A3P25940 DUSP8P4-201ENST00000399538 1761 ntBASIC29.14■■■□□ 2.26
COL5A3P25940 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL5A3P25940 TSPY26P-201ENST00000476365 1326 ntBASIC29.14■■■□□ 2.26
COL5A3P25940 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC29.14■■■□□ 2.25
COL5A3P25940 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.14■■■□□ 2.25
COL5A3P25940 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
COL5A3P25940 LSR-205ENST00000427250 1606 ntTSL 2 BASIC29.13■■■□□ 2.25
COL5A3P25940 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL5A3P25940 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.13■■■□□ 2.25
COL5A3P25940 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.13■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms