Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.16■□□□□ 0.51e-6■■■■□ 21.3
YBX3P16989 BTBD2-203ENST00000587742 559 ntTSL 517.3■□□□□ 0.361e-6■■■■□ 21.3
YBX3P16989 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC17.15■□□□□ 0.341e-6■■■■□ 21.3
YBX3P16989 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC17.15■□□□□ 0.341e-6■■■■□ 21.3
YBX3P16989 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.97■□□□□ 0.311e-6■■■■□ 21.3
YBX3P16989 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.091e-6■■■■□ 21.3
YBX3P16989 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.091e-6■■■■□ 21.3
YBX3P16989 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.021e-6■■■■□ 21.3
YBX3P16989 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.93□□□□□ -0.021e-6■■■■□ 21.3
YBX3P16989 TATDN3-207ENST00000526641 1073 ntTSL 2 BASIC14.79□□□□□ -0.041e-6■■■■□ 21.3
YBX3P16989 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.041e-6■■■■□ 21.3
YBX3P16989 KIF1B-213ENST00000635499 2098 ntTSL 513.04□□□□□ -0.323e-7■■■■□ 21.3
YBX3P16989 KIF1B-207ENST00000470616 519 ntTSL 312.93□□□□□ -0.342e-8■■■■□ 21.3
YBX3P16989 AL360169.2-201ENST00000619713 561 ntTSL 5 BASIC12.86□□□□□ -0.351e-6■■■■□ 21.3
YBX3P16989 TATDN3-206ENST00000525574 2206 ntTSL 512.5□□□□□ -0.411e-6■■■■□ 21.3
YBX3P16989 PHTF2-203ENST00000307305 4793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.551e-6■■■■□ 21.3
YBX3P16989 STXBP1-212ENST00000628768 2582 nt10.94□□□□□ -0.661e-6■■■■□ 21.3
YBX3P16989 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC10.37□□□□□ -0.751e-6■■■■□ 21.3
YBX3P16989 PHTF2-205ENST00000416283 5198 ntTSL 5 BASIC10.08□□□□□ -0.81e-6■■■■□ 21.3
YBX3P16989 TATDN3-209ENST00000527693 946 ntTSL 29.68□□□□□ -0.861e-6■■■■□ 21.3
YBX3P16989 PHTF2-209ENST00000454592 1563 ntTSL 1 (best)9.22□□□□□ -0.931e-6■■■■□ 21.3
YBX3P16989 GYPB-210ENST00000508841 610 ntTSL 58.86□□□□□ -0.991e-6■■■■□ 21.3
YBX3P16989 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.071e-6■■■■□ 21.3
YBX3P16989 CDC14A-204ENST00000455467 841 ntTSL 38.16□□□□□ -1.11e-6■■■■□ 21.3
YBX3P16989 TATDN3-205ENST00000525569 1000 ntTSL 27.58□□□□□ -1.21e-6■■■■□ 21.3
YBX3P16989 GYPB-209ENST00000508618 388 ntTSL 27.19□□□□□ -1.261e-6■■■■□ 21.3
YBX3P16989 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.68□□□□□ -1.341e-6■■■■□ 21.3
YBX3P16989 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.51□□□□□ -1.531e-6■■■■□ 21.3
YBX3P16989 PHTF2-212ENST00000479515 2467 ntTSL 55.5□□□□□ -1.531e-6■■■■□ 21.3
YBX3P16989 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.1□□□□□ -1.591e-6■■■■□ 21.3
YBX3P16989 PHTF2-210ENST00000468351 305 ntTSL 34.89□□□□□ -1.631e-6■■■■□ 21.3
YBX3P16989 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.15□□□□□ -1.751e-6■■■■□ 21.3
YBX3P16989 BAX-207ENST00000502487 1346 ntTSL 1 (best)34.55■■■■□ 3.128e-8■■■■□ 21.3
YBX3P16989 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.858e-8■■■■□ 21.3
YBX3P16989 BAX-211ENST00000513545 775 ntTSL 329.27■■■□□ 2.288e-8■■■■□ 21.3
YBX3P16989 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.6■■□□□ 1.218e-8■■■■□ 21.3
YBX3P16989 BAX-204ENST00000356483 677 ntTSL 1 (best)22.6■■□□□ 1.218e-8■■■■□ 21.3
YBX3P16989 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC22.6■■□□□ 1.218e-8■■■■□ 21.3
YBX3P16989 BAX-209ENST00000506183 383 ntTSL 1 (best)22.38■■□□□ 1.178e-8■■■■□ 21.3
YBX3P16989 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.78■□□□□ 0.448e-8■■■■□ 21.3
YBX3P16989 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.33■□□□□ 0.368e-8■■■■□ 21.3
YBX3P16989 MPI-219ENST00000568303 580 ntTSL 418.52■□□□□ 0.562e-6■■■■□ 21.3
YBX3P16989 SMC6-206ENST00000446852 2460 ntTSL 1 (best)19.19■□□□□ 0.661e-6■■■■□ 21.3
YBX3P16989 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.131e-6■■■■□ 21.3
YBX3P16989 SMC6-207ENST00000448223 5233 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.971e-6■■■■□ 21.3
YBX3P16989 SMC6-205ENST00000430591 480 ntTSL 58.71□□□□□ -1.021e-6■■■■□ 21.3
YBX3P16989 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.691e-6■■■■□ 21.3
YBX3P16989 RPAP1-201ENST00000304330 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.51e-7■■■■□ 21.3
YBX3P16989 RPAP1-211ENST00000568413 586 ntTSL 311.51□□□□□ -0.571e-7■■■■□ 21.3
YBX3P16989 RPAP1-204ENST00000562303 5897 ntTSL 1 (best)11.47□□□□□ -0.571e-7■■■■□ 21.3
YBX3P16989 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC9.77□□□□□ -0.851e-7■■■■□ 21.3
YBX3P16989 VPS51-204ENST00000527646 2144 ntTSL 1 (best)20.32■□□□□ 0.846e-7■■■■□ 21.3
YBX3P16989 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.333e-6■■■■□ 21.3
YBX3P16989 SEMA4C-206ENST00000482925 3776 ntTSL 213.64□□□□□ -0.233e-6■■■■□ 21.3
YBX3P16989 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.471e-6■■■■□ 21.3
YBX3P16989 NFE2L1-219ENST00000584137 529 ntTSL 431.22■■■□□ 2.591e-6■■■■□ 21.3
YBX3P16989 KLHL23-206ENST00000498202 843 ntTSL 325.47■■□□□ 1.671e-6■■■■□ 21.3
YBX3P16989 TSC2-219ENST00000563346 553 ntTSL 223.53■■□□□ 1.361e-6■■■■□ 21.3
YBX3P16989 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.312e-6■■■■□ 21.3
YBX3P16989 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.291e-6■■■■□ 21.3
YBX3P16989 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.091e-6■■■■□ 21.3
YBX3P16989 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.039e-7■■■■□ 21.3
YBX3P16989 NFE2L1-221ENST00000585062 556 ntTSL 421.18■□□□□ 0.981e-6■■■■□ 21.3
YBX3P16989 UNG-203ENST00000446767 2016 ntTSL 1 (best)21.06■□□□□ 0.969e-7■■■■□ 21.3
YBX3P16989 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.28■□□□□ 0.842e-6■■■■□ 21.3
YBX3P16989 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.811e-6■■■■□ 21.3
YBX3P16989 MFSD1-215ENST00000484166 2121 ntTSL 219.8■□□□□ 0.762e-6■■■■□ 21.3
YBX3P16989 UNG-204ENST00000539287 2234 ntTSL 519.15■□□□□ 0.669e-7■■■■□ 21.3
YBX3P16989 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.641e-6■■■■□ 21.3
YBX3P16989 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.549e-7■■■■□ 21.3
YBX3P16989 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.511e-8■■■■□ 21.3
YBX3P16989 TSC2-210ENST00000463808 842 ntTSL 218.17■□□□□ 0.51e-6■■■■□ 21.3
YBX3P16989 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.491e-8■■■■□ 21.3
YBX3P16989 KDM2B-216ENST00000543025 2522 ntTSL 1 (best)18.09■□□□□ 0.491e-6■■■■□ 21.3
YBX3P16989 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.88■□□□□ 0.452e-6■■■■□ 21.3
YBX3P16989 MFSD1-213ENST00000480292 2239 ntTSL 1 (best)17.88■□□□□ 0.452e-6■■■■□ 21.3
YBX3P16989 MFSD1-209ENST00000471500 2097 ntTSL 217.68■□□□□ 0.422e-6■■■■□ 21.3
YBX3P16989 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.04■□□□□ 0.322e-6■■■■□ 21.3
YBX3P16989 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.111e-8■■■■□ 21.3
YBX3P16989 ZNF672-202ENST00000423362 883 ntTSL 515.27■□□□□ 0.041e-6■■■■□ 21.3
YBX3P16989 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.011e-6■■■■□ 21.3
YBX3P16989 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.83□□□□□ -0.041e-6■■■■□ 21.3
YBX3P16989 DAZAP2-215ENST00000604900 1045 ntTSL 3 BASIC14.74□□□□□ -0.051e-6■■■■□ 21.3
YBX3P16989 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.091e-6■■■■□ 21.3
YBX3P16989 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.091e-6■■■■□ 21.3
YBX3P16989 DAZAP2-203ENST00000436900 1811 ntTSL 514.36□□□□□ -0.111e-6■■■■□ 21.3
YBX3P16989 KDM2B-209ENST00000538503 6676 ntTSL 513.7□□□□□ -0.221e-6■■■■□ 21.3
YBX3P16989 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.54□□□□□ -0.241e-6■■■■□ 21.3
YBX3P16989 DAZAP2-205ENST00000449723 2098 ntTSL 5 BASIC13.52□□□□□ -0.241e-6■■■■□ 21.3
YBX3P16989 KLHL23-202ENST00000392647 4077 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.271e-6■■■■□ 21.3
YBX3P16989 KDM2B-219ENST00000611216 3434 ntTSL 5 BASIC13.22□□□□□ -0.291e-6■■■■□ 21.3
YBX3P16989 DAZAP2-214ENST00000552459 3664 ntTSL 211.15□□□□□ -0.621e-6■■■■□ 21.3
YBX3P16989 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC10.19□□□□□ -0.781e-6■■■■□ 21.3
YBX3P16989 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC9.03□□□□□ -0.961e-6■■■■□ 21.3
YBX3P16989 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.071e-6■■■■□ 21.3
YBX3P16989 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC8.3□□□□□ -1.081e-6■■■■□ 21.3
YBX3P16989 WDR43-204ENST00000440983 541 ntTSL 45.73□□□□□ -1.491e-6■■■■□ 21.3
YBX3P16989 WDR43-201ENST00000296126 787 ntTSL 55.73□□□□□ -1.491e-6■■■■□ 21.3
YBX3P16989 MTCP1-205ENST00000504061 472 ntTSL 35.64□□□□□ -1.511e-6■■■■□ 21.3
YBX3P16989 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.19□□□□□ -1.581e-6■■■■□ 21.3
Retrieved 100 of 29,075 protein–RNA pairs in 1765.1 ms