Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV4A0A0B4J268 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV4A0A0B4J268 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV4A0A0B4J268 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV4A0A0B4J268 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV4A0A0B4J268 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV4A0A0B4J268 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAV4A0A0B4J268 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV4A0A0B4J268 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV4A0A0B4J268 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 AL033527.3-201ENST00000566366 1196 ntBASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 MIR4508-201ENST00000584178 70 ntBASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV4A0A0B4J268 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 MIR4281-201ENST00000580852 62 ntBASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV4A0A0B4J268 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 AC131274.2-201ENST00000580697 1507 ntBASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV4A0A0B4J268 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV4A0A0B4J268 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 YBX1P4-201ENST00000392794 808 ntBASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV4A0A0B4J268 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 EI24-213ENST00000618552 1747 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms