Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 AC015688.4-201ENST00000580780 1647 ntBASIC17.46■□□□□ 0.39
CTR9Q6PD62 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTR9Q6PD62 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CTR9Q6PD62 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CTR9Q6PD62 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CTR9Q6PD62 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTR9Q6PD62 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.46■□□□□ 0.38
CTR9Q6PD62 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.46■□□□□ 0.38
CTR9Q6PD62 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CTR9Q6PD62 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AC144522.1-201ENST00000625111 1658 ntBASIC17.45■□□□□ 0.38
CTR9Q6PD62 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 CICP24-201ENST00000605464 2705 ntBASIC17.45■□□□□ 0.38
CTR9Q6PD62 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.45■□□□□ 0.38
CTR9Q6PD62 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTR9Q6PD62 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 NDUFV2P1-201ENST00000596415 907 ntBASIC17.44■□□□□ 0.38
CTR9Q6PD62 AC026740.1-201ENST00000607068 791 ntBASIC17.44■□□□□ 0.38
CTR9Q6PD62 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CTR9Q6PD62 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTR9Q6PD62 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.43■□□□□ 0.38
CTR9Q6PD62 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTR9Q6PD62 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms