Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 DGCR5-201ENST00000399539 862 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 FTLP10-202ENST00000505798 471 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 ALG3P1-201ENST00000508806 1114 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC068587.3-201ENST00000526613 355 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC103988.2-201ENST00000561804 725 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 MIR5189-201ENST00000577370 114 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BX088702.1-201ENST00000610784 235 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 RPSAP52-203ENST00000622976 1023 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC215219.1-201ENST00000400706 1817 ntBASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIF3AQ9Y2N7 AC139712.1-201ENST00000378256 1875 ntBASIC13.33□□□□□ -0.27
HIF3AQ9Y2N7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HIF3AQ9Y2N7 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.33□□□□□ -0.27
HIF3AQ9Y2N7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
HIF3AQ9Y2N7 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
HIF3AQ9Y2N7 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 TDH-203ENST00000531764 1110 ntBASIC13.33□□□□□ -0.28
HIF3AQ9Y2N7 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms