Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 AL133338.1-201ENST00000565695 1517 ntBASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.52■□□□□ 0.39
CLIP2Q9UDT6 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC003102.2-201ENST00000589195 1469 ntBASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AL354877.1-201ENST00000424412 413 ntBASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC005730.2-201ENST00000564549 1184 ntBASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC007663.3-201ENST00000609632 465 ntBASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 TK2-221ENST00000620035 5060 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 SBF1P1-201ENST00000444527 5631 ntBASIC17.51■□□□□ 0.39
CLIP2Q9UDT6 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP2Q9UDT6 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 LINC01230-201ENST00000625222 3017 ntBASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 SALL4P5-201ENST00000419001 1760 ntBASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP2Q9UDT6 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms