Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 FP325330.2-201ENST00000624219 5630 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SCN1BQ07699 KRT8P12-202ENST00000472924 1397 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.23□□□□□ -0.29
SCN1BQ07699 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.23□□□□□ -0.29
SCN1BQ07699 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AC004449.1-201ENST00000564240 433 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.23□□□□□ -0.29
SCN1BQ07699 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AP001059.3-201ENST00000619053 235 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 MIR6069-201ENST00000620069 79 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 LINC00628-201ENST00000628516 1289 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SCN1BQ07699 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 AL354702.1-201ENST00000442006 1960 ntBASIC13.23□□□□□ -0.29
SCN1BQ07699 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SCN1BQ07699 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SCN1BQ07699 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SCN1BQ07699 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
SCN1BQ07699 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
SCN1BQ07699 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
SCN1BQ07699 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SCN1BQ07699 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.22□□□□□ -0.29
SCN1BQ07699 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.22□□□□□ -0.29
SCN1BQ07699 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
SCN1BQ07699 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SCN1BQ07699 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.22□□□□□ -0.29
SCN1BQ07699 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
SCN1BQ07699 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SCN1BQ07699 KRT18P13-201ENST00000400056 1290 ntBASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms