Protein–RNA interactions for Protein: Q9UPX8

SHANK2, SH3 and multiple ankyrin repeat domains protein 2, humanhuman

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2Q9UPX8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 AC006529.1-201ENST00000459978 637 ntBASIC21.32■■□□□ 1
SHANK2Q9UPX8 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC21.32■■□□□ 1
SHANK2Q9UPX8 AC073592.2-201ENST00000623062 780 ntBASIC21.32■■□□□ 1
SHANK2Q9UPX8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK2Q9UPX8 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 USP39-220ENST00000613444 2161 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 AC132872.4-202ENST00000622924 2756 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SAT1-201ENST00000379251 801 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SAT1-202ENST00000379253 909 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SAT1-203ENST00000379254 868 ntTSL 3 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 ACTG1P19-201ENST00000418987 1116 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 AC092573.1-201ENST00000433054 884 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 RPL35P9-201ENST00000446059 350 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 SLC25A15P3-201ENST00000505530 290 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SNORD3B-1-201ENST00000577988 758 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 LINC00244-201ENST00000625073 613 ntBASIC21.31■■□□□ 1
SHANK2Q9UPX8 HELLS-212ENST00000630929 400 ntTSL 5 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
SHANK2Q9UPX8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK2Q9UPX8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 AC117503.4-201ENST00000623229 1418 ntBASIC21.3■■□□□ 1
SHANK2Q9UPX8 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 BAK1P1-201ENST00000317045 636 ntBASIC21.3■■□□□ 1
SHANK2Q9UPX8 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 RN7SL396P-201ENST00000471086 295 ntBASIC21.3■■□□□ 1
SHANK2Q9UPX8 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 AC145285.5-201ENST00000562217 361 ntBASIC21.3■■□□□ 1
SHANK2Q9UPX8 ST5-261ENST00000626808 1071 ntTSL 5 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK2Q9UPX8 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC21.3■■□□□ 1
SHANK2Q9UPX8 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC21.29■■□□□ 1
SHANK2Q9UPX8 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK2Q9UPX8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK2Q9UPX8 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK2Q9UPX8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC21.29■■□□□ 1
SHANK2Q9UPX8 DUT-208ENST00000559540 1441 ntTSL 2 BASIC21.29■■□□□ 1
SHANK2Q9UPX8 USP17L6P-201ENST00000382470 1197 ntBASIC21.29■■□□□ 1
SHANK2Q9UPX8 NME4-203ENST00000397722 1232 ntTSL 2 BASIC21.29■■□□□ 1
SHANK2Q9UPX8 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHANK2Q9UPX8 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK2Q9UPX8 AP003398.1-201ENST00000531124 318 ntBASIC21.29■■□□□ 1
SHANK2Q9UPX8 AL132994.1-201ENST00000554098 400 ntBASIC21.29■■□□□ 1
SHANK2Q9UPX8 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC21.29■■□□□ 1
SHANK2Q9UPX8 MYB-242ENST00000618728 3545 ntTSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms