Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 HLA-J-203ENST00000494367 1087 ntBASIC13.19□□□□□ -0.3
RFT1Q96AA3 AC027369.6-201ENST00000525520 931 ntBASIC13.19□□□□□ -0.3
RFT1Q96AA3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 AC044860.1-202ENST00000559481 777 ntBASIC13.19□□□□□ -0.3
RFT1Q96AA3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFT1Q96AA3 AC073548.1-201ENST00000624088 1882 ntBASIC13.19□□□□□ -0.3
RFT1Q96AA3 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.19□□□□□ -0.3
RFT1Q96AA3 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.18□□□□□ -0.3
RFT1Q96AA3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AC004945.1-201ENST00000416738 983 ntBASIC13.18□□□□□ -0.3
RFT1Q96AA3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AC069120.2-201ENST00000524091 540 ntBASIC13.18□□□□□ -0.3
RFT1Q96AA3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 INE2-201ENST00000630399 1874 ntBASIC13.18□□□□□ -0.3
RFT1Q96AA3 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFT1Q96AA3 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
RFT1Q96AA3 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RFT1Q96AA3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.17□□□□□ -0.3
RFT1Q96AA3 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RFT1Q96AA3 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RFT1Q96AA3 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFT1Q96AA3 AL023775.1-201ENST00000454907 1746 ntBASIC13.17□□□□□ -0.3
RFT1Q96AA3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFT1Q96AA3 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms