Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 NUS1P3-201ENST00000423502 862 ntBASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC092364.2-202ENST00000597012 1073 ntBASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC107373.2-201ENST00000607735 490 ntBASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 AC215219.1-201ENST00000400706 1817 ntBASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.75□□□□□ -0.05
NUDCD3Q8IVD9 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 AC112482.1-201ENST00000492080 688 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 AC026410.3-201ENST00000514280 936 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 AC027369.6-201ENST00000525520 931 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 CBFB-203ENST00000561924 584 ntTSL 5 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 AC099521.3-201ENST00000624251 2938 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 DGCR9-201ENST00000609630 2415 ntBASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUDCD3Q8IVD9 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms