Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA4P78363 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 NSD1-211ENST00000511258 809 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC12.72□□□□□ -0.37
ABCA4P78363 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.72□□□□□ -0.37
ABCA4P78363 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.72□□□□□ -0.37
ABCA4P78363 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC025262.2-201ENST00000623975 1056 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
ABCA4P78363 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
ABCA4P78363 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.71□□□□□ -0.37
ABCA4P78363 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
ABCA4P78363 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 AC092171.5-201ENST00000608012 942 ntBASIC12.71□□□□□ -0.37
ABCA4P78363 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
ABCA4P78363 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.71□□□□□ -0.37
ABCA4P78363 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
ABCA4P78363 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.38
ABCA4P78363 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
ABCA4P78363 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 FAM90A7P-201ENST00000382628 1395 ntBASIC12.71□□□□□ -0.38
ABCA4P78363 FAM90A23P-201ENST00000400136 1395 ntBASIC12.71□□□□□ -0.38
ABCA4P78363 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 IDS-203ENST00000428056 1213 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC12.71□□□□□ -0.38
ABCA4P78363 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.71□□□□□ -0.38
ABCA4P78363 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC12.71□□□□□ -0.38
ABCA4P78363 RPL17P45-201ENST00000586289 509 ntBASIC12.71□□□□□ -0.38
ABCA4P78363 AC020922.3-201ENST00000595064 547 ntBASIC12.71□□□□□ -0.38
ABCA4P78363 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
ABCA4P78363 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.7□□□□□ -0.38
ABCA4P78363 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.7□□□□□ -0.38
ABCA4P78363 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
ABCA4P78363 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.7□□□□□ -0.38
ABCA4P78363 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms