Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP98P52948 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP98P52948 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP98P52948 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP98P52948 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP98P52948 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP98P52948 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.9■□□□□ 0.46
NUP98P52948 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
NUP98P52948 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.9■□□□□ 0.46
NUP98P52948 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NUP98P52948 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NUP98P52948 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
NUP98P52948 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.89■□□□□ 0.46
NUP98P52948 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17.89■□□□□ 0.46
NUP98P52948 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
NUP98P52948 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP98P52948 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP98P52948 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 AL157792.1-201ENST00000488281 530 ntBASIC17.89■□□□□ 0.45
NUP98P52948 PPIA-208ENST00000489459 907 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP98P52948 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP98P52948 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP98P52948 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP98P52948 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.89■□□□□ 0.45
NUP98P52948 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.89■□□□□ 0.45
NUP98P52948 HPX-213ENST00000615166 826 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP98P52948 PPIA-210ENST00000620047 827 ntTSL 5 BASIC17.89■□□□□ 0.45
NUP98P52948 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NUP98P52948 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.89■□□□□ 0.45
NUP98P52948 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
NUP98P52948 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 AP003398.1-201ENST00000531124 318 ntBASIC17.88■□□□□ 0.45
NUP98P52948 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 SNORD3B-1-201ENST00000577988 758 ntBASIC17.88■□□□□ 0.45
NUP98P52948 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 AC006529.1-201ENST00000459978 637 ntBASIC17.88■□□□□ 0.45
NUP98P52948 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
NUP98P52948 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.88■□□□□ 0.45
NUP98P52948 AL022344.2-201ENST00000568976 968 ntBASIC17.88■□□□□ 0.45
NUP98P52948 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
NUP98P52948 LINC00431-202ENST00000636375 159 ntBASIC17.88■□□□□ 0.45
NUP98P52948 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
NUP98P52948 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms