Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 MIR658-201ENST00000385210 100 ntBASIC15.32■□□□□ 0.04
PTPN9P43378 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.32■□□□□ 0.04
PTPN9P43378 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.32■□□□□ 0.04
PTPN9P43378 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.32■□□□□ 0.04
PTPN9P43378 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN9P43378 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.32■□□□□ 0.04
PTPN9P43378 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN9P43378 AC009955.4-201ENST00000597192 544 ntBASIC15.32■□□□□ 0.04
PTPN9P43378 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN9P43378 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN9P43378 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 E2F3P2-201ENST00000447755 1422 ntBASIC15.32■□□□□ 0.04
PTPN9P43378 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN9P43378 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PTPN9P43378 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN9P43378 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN9P43378 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN9P43378 RNA5SP412-201ENST00000516234 123 ntBASIC15.31■□□□□ 0.04
PTPN9P43378 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 MIR4783-201ENST00000580343 82 ntBASIC15.31■□□□□ 0.04
PTPN9P43378 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN9P43378 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN9P43378 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 AC011498.7-201ENST00000624986 2027 ntBASIC15.31■□□□□ 0.04
PTPN9P43378 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTPN9P43378 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 AC027601.5-201ENST00000624065 2482 ntBASIC15.31■□□□□ 0.04
PTPN9P43378 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN9P43378 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms