Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
COL3A1P02461 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
COL3A1P02461 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 TKT-201ENST00000296289 1931 ntTSL 5 BASIC19.08■□□□□ 0.65
COL3A1P02461 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
COL3A1P02461 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.08■□□□□ 0.65
COL3A1P02461 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC19.08■□□□□ 0.64
COL3A1P02461 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
COL3A1P02461 KRT17P5-201ENST00000332088 839 ntBASIC19.08■□□□□ 0.64
COL3A1P02461 MIR33B-201ENST00000385104 96 ntBASIC19.08■□□□□ 0.64
COL3A1P02461 AC026320.2-201ENST00000434379 478 ntBASIC19.08■□□□□ 0.64
COL3A1P02461 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.08■□□□□ 0.64
COL3A1P02461 AC114947.1-202ENST00000514136 344 ntBASIC19.08■□□□□ 0.64
COL3A1P02461 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
COL3A1P02461 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.08■□□□□ 0.64
COL3A1P02461 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC19.08■□□□□ 0.64
COL3A1P02461 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.08■□□□□ 0.64
COL3A1P02461 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
COL3A1P02461 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL3A1P02461 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.07■□□□□ 0.64
COL3A1P02461 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COL3A1P02461 AC023908.3-201ENST00000564211 3047 ntBASIC19.07■□□□□ 0.64
COL3A1P02461 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL3A1P02461 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL3A1P02461 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL3A1P02461 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
COL3A1P02461 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC19.06■□□□□ 0.64
COL3A1P02461 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC19.06■□□□□ 0.64
COL3A1P02461 FGFR3P1-201ENST00000449999 601 ntBASIC19.06■□□□□ 0.64
COL3A1P02461 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.06■□□□□ 0.64
COL3A1P02461 MRPL22P1-201ENST00000505398 616 ntBASIC19.06■□□□□ 0.64
COL3A1P02461 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.06■□□□□ 0.64
COL3A1P02461 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL3A1P02461 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 AC084781.1-201ENST00000613737 656 ntBASIC19.06■□□□□ 0.64
COL3A1P02461 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.06■□□□□ 0.64
COL3A1P02461 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 GOLGA8VP-201ENST00000559009 1798 ntBASIC19.06■□□□□ 0.64
COL3A1P02461 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 AMT-256ENST00000638063 1783 ntTSL 5 BASIC19.06■□□□□ 0.64
COL3A1P02461 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL3A1P02461 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL3A1P02461 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC19.05■□□□□ 0.64
COL3A1P02461 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC19.05■□□□□ 0.64
COL3A1P02461 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC19.05■□□□□ 0.64
COL3A1P02461 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
COL3A1P02461 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms