Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 AF274858.1-201ENST00000406288 372 ntBASIC11.95□□□□□ -0.5
VPS13CQ709C8 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 DUX4L50-201ENST00000455245 715 ntBASIC11.95□□□□□ -0.5
VPS13CQ709C8 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC11.95□□□□□ -0.5
VPS13CQ709C8 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
VPS13CQ709C8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CCL25-202ENST00000315626 450 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 RN7SL357P-201ENST00000581065 298 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 AC117503.4-201ENST00000623229 1418 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 RN7SL288P-201ENST00000490496 291 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CTBP2P6-201ENST00000526402 1229 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 AC226150.1-201ENST00000544259 466 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
VPS13CQ709C8 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 GUSBP10-201ENST00000417412 665 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 ALG1L3P-201ENST00000503331 765 ntBASIC11.94□□□□□ -0.5
VPS13CQ709C8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
VPS13CQ709C8 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 CISD2-202ENST00000503643 808 ntTSL 2 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 VENTXP3-201ENST00000546480 773 ntBASIC11.93□□□□□ -0.5
VPS13CQ709C8 GAS7-216ENST00000583882 553 ntTSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 AC023906.1-201ENST00000486386 453 ntBASIC11.93□□□□□ -0.5
VPS13CQ709C8 BCRP4-201ENST00000506079 804 ntBASIC11.93□□□□□ -0.5
VPS13CQ709C8 KRT8P1-201ENST00000557533 1207 ntBASIC11.93□□□□□ -0.5
VPS13CQ709C8 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
VPS13CQ709C8 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
VPS13CQ709C8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms