Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.39□□□□□ -0.11
TNFP01375 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 AL353637.1-201ENST00000451571 732 ntBASIC14.39□□□□□ -0.11
TNFP01375 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.39□□□□□ -0.11
TNFP01375 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.39□□□□□ -0.11
TNFP01375 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 AC105129.2-201ENST00000559536 390 ntBASIC14.39□□□□□ -0.11
TNFP01375 AC103988.2-201ENST00000561804 725 ntBASIC14.39□□□□□ -0.11
TNFP01375 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 FGFR3P5-201ENST00000564496 886 ntBASIC14.39□□□□□ -0.11
TNFP01375 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 AL590440.2-201ENST00000641973 1595 ntBASIC14.39□□□□□ -0.11
TNFP01375 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 AC018442.1-201ENST00000421439 2061 ntBASIC14.38□□□□□ -0.11
TNFP01375 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 AC139712.1-201ENST00000378256 1875 ntBASIC14.38□□□□□ -0.11
TNFP01375 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 TMBIM7P-202ENST00000641474 1516 ntBASIC14.38□□□□□ -0.11
TNFP01375 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.38□□□□□ -0.11
TNFP01375 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.38□□□□□ -0.11
TNFP01375 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC14.38□□□□□ -0.11
TNFP01375 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.38□□□□□ -0.11
TNFP01375 RNA5SP423-201ENST00000517127 109 ntBASIC14.38□□□□□ -0.11
TNFP01375 POU5F1P2-201ENST00000521750 823 ntBASIC14.38□□□□□ -0.11
TNFP01375 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
TNFP01375 AC079328.1-201ENST00000560358 952 ntBASIC14.38□□□□□ -0.11
TNFP01375 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 RN7SL574P-201ENST00000581512 297 ntBASIC14.38□□□□□ -0.11
TNFP01375 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
TNFP01375 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TNFP01375 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
TNFP01375 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.38□□□□□ -0.11
TNFP01375 KRT8P21-201ENST00000430398 1491 ntBASIC14.38□□□□□ -0.11
TNFP01375 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.38□□□□□ -0.11
TNFP01375 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 TCAF2P1-201ENST00000291129 2421 ntBASIC14.37□□□□□ -0.11
TNFP01375 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TNFP01375 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TNFP01375 AC015688.4-201ENST00000580780 1647 ntBASIC14.37□□□□□ -0.11
TNFP01375 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.37□□□□□ -0.11
TNFP01375 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.37□□□□□ -0.11
TNFP01375 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TNFP01375 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.37□□□□□ -0.11
TNFP01375 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TNFP01375 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms