Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 AC108725.1-201ENST00000495472 409 ntBASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 C18orf15-201ENST00000623680 2534 ntBASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CLIP3Q96DZ5 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 MIR326-201ENST00000362220 95 ntBASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 FAM8A4P-201ENST00000435433 1213 ntBASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP3Q96DZ5 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms