Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SRP9P49458 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SRP9P49458 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.25□□□□□ -0.29
SRP9P49458 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 RPL13AP25-201ENST00000484130 612 ntBASIC13.25□□□□□ -0.29
SRP9P49458 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 MIR3197-201ENST00000582241 73 ntBASIC13.25□□□□□ -0.29
SRP9P49458 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
SRP9P49458 AC027307.3-201ENST00000594262 1100 ntBASIC13.25□□□□□ -0.29
SRP9P49458 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SRP9P49458 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SRP9P49458 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
SRP9P49458 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SRP9P49458 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SRP9P49458 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SRP9P49458 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SRP9P49458 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.24□□□□□ -0.29
SRP9P49458 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SRP9P49458 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.24□□□□□ -0.29
SRP9P49458 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.24□□□□□ -0.29
SRP9P49458 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.24□□□□□ -0.29
SRP9P49458 AC000095.1-201ENST00000603208 874 ntBASIC13.24□□□□□ -0.29
SRP9P49458 AC093726.1-201ENST00000608064 963 ntBASIC13.24□□□□□ -0.29
SRP9P49458 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.24□□□□□ -0.29
SRP9P49458 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.24□□□□□ -0.29
SRP9P49458 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.24□□□□□ -0.29
SRP9P49458 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms