Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SRP14-208ENST00000560773 468 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 AGGF1P1-201ENST00000509500 2073 ntBASIC12.61□□□□□ -0.39
COL12A1Q99715 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.61□□□□□ -0.39
COL12A1Q99715 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.61□□□□□ -0.39
COL12A1Q99715 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 GCOM2-201ENST00000509133 1104 ntBASIC12.61□□□□□ -0.39
COL12A1Q99715 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 DLK1-205ENST00000556051 469 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 ABCC6P1-203ENST00000565566 1170 ntBASIC12.61□□□□□ -0.39
COL12A1Q99715 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
COL12A1Q99715 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC011431.1-201ENST00000512971 230 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
COL12A1Q99715 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.6□□□□□ -0.39
COL12A1Q99715 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.6□□□□□ -0.39
COL12A1Q99715 AL591424.3-201ENST00000614278 872 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AL136172.1-201ENST00000598590 1394 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC139712.1-201ENST00000378256 1875 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC12.6□□□□□ -0.39
COL12A1Q99715 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC131206.1-201ENST00000538078 1211 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC12.6□□□□□ -0.39
COL12A1Q99715 AC016582.2-202ENST00000587765 1094 ntBASIC12.6□□□□□ -0.39
COL12A1Q99715 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.6□□□□□ -0.39
COL12A1Q99715 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.6□□□□□ -0.39
COL12A1Q99715 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms