Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC4Q92889 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC4Q92889 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ERCC4Q92889 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC4Q92889 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ERCC4Q92889 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 AGGF1P1-201ENST00000509500 2073 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC4Q92889 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
ERCC4Q92889 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 SPDYE19P-201ENST00000338590 713 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 TPT1P11-201ENST00000458482 498 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.92■□□□□ 0.3
ERCC4Q92889 TPRX2P-201ENST00000535362 881 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC4Q92889 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC4Q92889 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 SPDYE22P-201ENST00000582158 798 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 AC106028.4-201ENST00000614509 607 ntBASIC16.92■□□□□ 0.3
ERCC4Q92889 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC4Q92889 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
ERCC4Q92889 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
ERCC4Q92889 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ERCC4Q92889 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC4Q92889 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC4Q92889 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 MST1P2-201ENST00000457982 2291 ntBASIC16.91■□□□□ 0.3
ERCC4Q92889 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ERCC4Q92889 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms